Softwares and databases


Yeast Cell Cycle Dynamics

Database to explore the cell cycle dynamics of a collection of cell cycle mutants.

Ref. : Garmendia-Torres et al, eLife, 2018

PhyloCell

Software (with graphical user-interface) for semi-automated image processing of time lapse microscopy data : cell segmentation, sub-cellular object segmentation, cell tracking, lineage analysis, fluorescence quantification.

Download on GitHub

Ref. : Goulev et al, eLife, 2017

Autotrack

Command-line software for automated image processing of yeast single cell division data.
Since it is based on the architecture of PhyloCell, it requires PhyloCell functions to work properly.

Download on GitHub

Ref. : Garmendia-Torres et al, eLife, 2018

COSPLAY

A toolbox for combinatorial assembly of expression vectors in yeast. This method is a cloning-free technique to assemble yeast plasmids using the Golden Gate assembly technique.
In addition, a software has been developed to help.

Download on GitHub

Ref. : Goulev et al., Biorxiv 2019

Protocols


Coming soon.